PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000157.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 154aa    MW: 17010 Da    PI: 9.9169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000157.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-2060111256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrd       + +r++lg+f+taeeAa a+++a+ +++g+
  Itr_sc000157.1_g00014.1  60 HYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFDTAEEAALAYDRAAFQMRGA 111
                              8********.**********....33334*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.49E-3259120No hitNo description
Gene3DG3DSA:3.30.730.101.6E-3159118IPR001471AP2/ERF domain
PfamPF008471.7E-1560110IPR001471AP2/ERF domain
SMARTSM003801.3E-3660124IPR001471AP2/ERF domain
PROSITE profilePS5103223.78860118IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2360119IPR016177DNA-binding domain
PRINTSPR003671.3E-116172IPR001471AP2/ERF domain
PRINTSPR003671.3E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVPGTQNELP LNENDSQEVV LYQILNEAST LNSSPFLQPR NRGVTQQSFL RPAQSIAKKH  60
YRGVRRRPWG KFAAEIRDSA RQGARVWLGT FDTAEEAALA YDRAAFQMRG ARALLNFPAH  120
LVEAPPSSVL RVHYPSNSSC SNEASSGGTV DPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-3359118463ATERF1
3gcc_A5e-3359118463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233987.15e-59pathogenesis-related genes transcriptional activator PTI5
RefseqXP_015874196.16e-59PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
RefseqXP_015874202.16e-59PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046816e-61PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A068TKE62e-58A0A068TKE6_COFCA; Uncharacterized protein
TrEMBLV5REQ62e-58V5REQ6_COFAR; ERF transcription factor 11
STRINGSolyc02g077370.1.11e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-30ethylene responsive element binding factor 2